fix_mzml.RdFix a mzML file with SIM data for reading.
fix_mzml(mzml_file, new_mzml_file)
| mzml_file | character vector containing the filename of the mzML. |
|---|---|
| new_mzml_file | character vector containing the filename of the new to create mzML file. |
mzML files made with more recent versions of ProteoWizard can generate the following error: `Error: Can not open file <filename>! Original error was: Error in pwizModule$open(filename): [IO::HandlerBinaryDataArray] Unknown binary data type.`
This is error is caused by the usage of an older ProteoWizard library by the package mzR (for more information see https://github.com/lgatto/MSnbase/issues/517).
This function uses the `xml2` package to remove the part which is giving problems.
Rico Derks